深度长文『参考文献』| 2019年度circRNA研究盘点
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深度长文 | 2019年circRNA研究盘点分析


1. Li, X., et al., A unified mechanism for intron and exon definition and back-splicing. Nature, 2019. 573(7774): p. 375-380.

2. Rei Yoshimoto, K.R., Thomas Hansen, J?rgen Kjems & Akila Mayeda, A., Biosynthesis of Circular RNA ciRS-7/CDR1as Is Mediated by Mammalian-Wide Interspersed Repeats (MIRs). BioRxiv, 2019.

3. Wu, K., et al., Circular RNA F-circSR derived from SLC34A2-ROS1 fusion gene promotes cell migration in non-small cell lung cancer. Mol Cancer, 2019. 18(1): p. 98.

4. Liang, D., et al., The Output of Protein-Coding Genes Shifts to Circular RNAs When the Pre-mRNA Processing Machinery Is Limiting. Mol Cell, 2017. 68(5): p. 940-954 e3.

5. Vo, J.N., et al., The Landscape of Circular RNA in Cancer. Cell, 2019. 176(4): p. 869-881 e13.

6. Xu Liu, X.W., Jingxin Li, Shanshan Hu, Yuqi Deng, Hao Yin, Xichen Bao, Qiangfeng Cliff Zhang, Geng Wang, Baolong Wang, Qinghua Shi, Ge Shan, The identification of mecciRNAs and their roles in mitochondrial entry of proteins. bioRxiv, 2019.

7. Chen, R.X., et al., N(6)-methyladenosine modification of circNSUN2 facilitates cytoplasmic export and stabilizes HMGA2 to promote colorectal liver metastasis. Nat Commun, 2019. 10(1): p. 4695.

8. Hua Su, L.Z., Na Li, Guowen Wang, Lingfang Wu, Xiuqing Ma, Kejing Ying, Ruifeng Zhang, Transcriptome-wide map of m6A circRNAs identified in hypoxic pulmonary hypertension rat model. BioRxiv, 2019.

9. van Heesch, S., et al., The Translational Landscape of the Human Heart. Cell, 2019. 178(1): p. 242-260 e29.

10. Mahmoudi, E., et al., Depolarization-Associated CircRNA Regulate Neural Gene Expression and in Some Cases May Function as Templates for Translation. Cells, 2019. 9(1).

11. Xia, X., et al., A novel tumor suppressor protein encoded by circular AKT3 RNA inhibits glioblastoma tumorigenicity by competing with active phosphoinositide-dependent Kinase-1. Mol Cancer, 2019. 18(1): p. 131.

12. Zheng, X., et al., A novel protein encoded by a circular RNA circPPP1R12A promotes tumor pathogenesis and metastasis of colon cancer via Hippo-YAP signaling. Mol Cancer, 2019. 18(1): p. 47.

13. Liang, W.C., et al., Translation of the circular RNA circbeta-catenin promotes liver cancer cell growth through activation of the Wnt pathway. Genome Biol, 2019. 20(1): p. 84.

14. Zhao, J., et al., Transforming activity of an oncoprotein-encoding circular RNA from human papillomavirus. Nat Commun, 2019. 10(1): p. 2300.

15. Xiaojuan Fan, Y.Y., Zefeng Wang, Pervasive translation of circular RNAs driven by short IRES-like elements. BioRxiv, 2019.

16. Chen, S., et al., Widespread and Functional RNA Circularization in Localized Prostate Cancer. Cell, 2019. 176(4): p. 831-843 e22.

17. Li, Q., et al., CircACC1 Regulates Assembly and Activation of AMPK Complex under Metabolic Stress. Cell Metab, 2019. 30(1): p. 157-173 e7.

18. Wu, N., et al., Translation of yes-associated protein (YAP) was antagonized by its circular RNA via suppressing the assembly of the translation initiation machinery. Cell Death Differ, 2019. 26(12): p. 2758-2773.

19. Park, O.H., et al., Endoribonucleolytic Cleavage of m(6)A-Containing RNAs by RNase P/MRP Complex. Mol Cell, 2019. 74(3): p. 494-507 e8.

20. Jia, R., et al., Defining an evolutionarily conserved role of GW182 in circular RNA degradation. Cell Discov, 2019. 5: p. 45.

21. Liu, C.X., et al., Structure and Degradation of Circular RNAs Regulate PKR Activation in Innate Immunity. Cell, 2019. 177(4): p. 865-880 e21.

22. Abdollahzadeh, R., et al., Competing endogenous RNA (ceRNA) cross talk and language in ceRNA regulatory networks: A new look at hallmarks of breast cancer. J Cell Physiol, 2019. 234(7): p. 10080-10100.

23. Wesselhoeft, R.A., et al., RNA Circularization Diminishes Immunogenicity and Can Extend Translation Duration In Vivo. Mol Cell, 2019. 74(3): p. 508-520 e4.

24. Chen, Y.G., et al., N6-Methyladenosine Modification Controls Circular RNA Immunity. Mol Cell, 2019. 76(1): p. 96-109 e9.

25. Chen, N., et al., A novel FLI1 exonic circular RNA promotes metastasis in breast cancer by coordinately regulating TET1 and DNMT1. Genome Biol, 2018. 19(1): p. 218.

26. Huang, S., et al., Loss of Super-Enhancer-Regulated circRNA Nfix Induces Cardiac Regeneration After Myocardial Infarction in Adult Mice. Circulation, 2019. 139(25): p. 2857-2876.

27. Wang, L., et al., Circular RNA circRHOT1 promotes hepatocellular carcinoma progression by initiation of NR2F6 expression. Mol Cancer, 2019. 18(1): p. 119.

28. Yang, F., et al., Circ-HuR suppresses HuR expression and gastric cancer progression by inhibiting CNBP transactivation. Mol Cancer, 2019. 18(1): p. 158.

29. Li, H., et al., Therapeutic targeting of circ-CUX1/EWSR1/MAZ axis inhibits glycolysis and neuroblastoma progression. EMBO Mol Med, 2019. 11(12): p. e10835.

30. Sun, Y.M., et al., circMYBL2, a circRNA from MYBL2, regulates FLT3 translation by recruiting PTBP1 to promote FLT3-ITD AML progression. Blood, 2019. 134(18): p. 1533-1546.

31. Li, Q., et al., Circular RNA MAT2B Promotes Glycolysis and Malignancy of Hepatocellular Carcinoma Through the miR-338-3p/PKM2 Axis Under Hypoxic Stress. Hepatology, 2019. 70(4): p. 1298-1316.

32. Wei, Y., et al., A Noncoding Regulatory RNAs Network Driven by Circ-CDYL Acts Specifically in the Early Stages Hepatocellular Carcinoma. Hepatology, 2019.

33. Hu, Z.Q., et al., Circular RNA Sequencing Identifies CircASAP1 as a Key Regulator in Hepatocellular Carcinoma Metastasis. Hepatology, 2019.

34. Ju, H.Q., et al., A circRNA signature predicts postoperative recurrence in stage II/III colon cancer. EMBO Mol Med, 2019. 11(10): p. e10168.

35. Hall, I.F., et al., Circ_Lrp6, a Circular RNA Enriched in Vascular Smooth Muscle Cells, Acts as a Sponge Regulating miRNA-145 Function. Circ Res, 2019. 124(4): p. 498-510.

36. Garikipati, V.N.S., et al., Circular RNA CircFndc3b modulates cardiac repair after myocardial infarction via FUS/VEGF-A axis. Nat Commun, 2019. 10(1): p. 4317.

37. Liu, C., et al., Targeting pericyte-endothelial cell crosstalk by circular RNA-cPWWP2A inhibition aggravates diabetes-induced microvascular dysfunction. Proc Natl Acad Sci U S A, 2019. 116(15): p. 7455-7464.

38. Zhang, S.B., et al., CircAnks1a in the spinal cord regulates hypersensitivity in a rodent model of neuropathic pain. Nat Commun, 2019. 10(1): p. 4119.

39. Zhu, P., et al., IL-13 secreted by ILC2s promotes the self-renewal of intestinal stem cells through circular RNA circPan3. Nat Immunol, 2019. 20(2): p. 183-194.

40. Litke, J.L. and S.R. Jaffrey, Highly efficient expression of circular RNA aptamers in cells using autocatalytic transcripts. Nat Biotechnol, 2019. 37(6): p. 667-675.

41. Xiao, M.S. and J.E. Wilusz, An improved method for circular RNA purification using RNase R that efficiently removes linear RNAs containing G-quadruplexes or structured 3' ends. Nucleic Acids Res, 2019. 47(16): p. 8755-8769.

42. Feng, J., et al., Genome-wide identification of cancer-specific alternative splicing in circRNA. Mol Cancer, 2019. 18(1): p. 35.

43. Ji, P., et al., Expanded Expression Landscape and Prioritization of Circular RNAs in Mammals. Cell Rep, 2019. 26(12): p. 3444-3460 e5.

44. Humphreys, D.T., et al., Ularcirc: visualization and enhanced analysis of circular RNAs via back and canonical forward splicing. Nucleic Acids Res, 2019. 47(20): p. e123.

45. Ruan, H., et al., Comprehensive characterization of circular RNAs in ~ 1000 human cancer cell lines. Genome Med, 2019. 11(1): p. 55.

46. Teng, X., et al., NPInter v4.0: an integrated database of ncRNA interactions. Nucleic Acids Res, 2019.

47. Yang, Y., et al., Circular RNA profile in liver tissue of EpCAM knockout mice. Int J Mol Med, 2019. 44(3): p. 1063-1077.

48. Kristensen, L.S., et al., The biogenesis, biology and characterization of circular RNAs. Nat Rev Genet, 2019. 20(11): p. 675-691.

49. Patop, I.L., S. Wust, and S. Kadener, Past, present, and future of circRNAs. EMBO J, 2019. 38(16): p. e100836.